ProteinPilot™ Software

Mass Spectrometry Software-ProteinPilot™ Software
Mass Spectrometry Software-ProteinPilot™ Software
Mass Spectrometry Software-ProteinPilot™ Software
Mass Spectrometry Software-ProteinPilot™ Software
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Easy to use ProteinPilot™ Software streamlines protein identification and quantitation, enabling you to identify hundreds of peptide modifications and non-tryptic cleavages simultaneously; easily distinguish protein isoforms, protein subsets, and suppress false positives; and visualize peptide-protein associations and relationships. With generic input for non-AB SCIEX instruments via .mgf format, the software is compatible with all proteomics MS/MS systems.

Trial Software Downloads
To download a trial version and obtain license keys, visit our Protein Pilot Trial Software Download Registration Site



 

Status: Available  Item status information

 

Key Features of ProteinPilot™ Software

  • Automatic extensive peptide identification - Search for hundreds of biological and other modifications, genetic variants, and unexpected cleavages simultaneously with the Paragon™ Algorithm, without an explosion of false positives, cost in search time, or complexity of multi-stage analysis that plague alternate approaches.
  • 'One click pipeline' - a single click triggers complete processing that includes signal processing to make peak lists and integrate signals for quantitation, peptide identification which includes recalibration of the data, protein inference of the identified peptides, and analysis of relative quantitation for label-based workflows.
  • Distinguish protein isoforms and protein subsets, and suppress false positives using the embedded industry-leading Pro Group™ Algorithm for protein grouping analysis.
  • Easier search setup - Sample information is entered into the software's unique user interface in the terms used by the scientist in the lab, and the software intelligently determines the search parameters. Top quality identification results are delivered without the need for informatics experitise.
  • Quantitiative workflows - Optimized support for iTRAQ®, ICAT®, and SILAC™ reagent workflows, including 4plex, 8plex and the new mTRAQ® reagents for biomarker discovery and verification.
  • Automatic and rigorous False Discovery Rate (FDR) Analysis using decoy database searching provides the highest level of defense of the quality of your results.

 

Support for New Instruments

This software supports the new AB SCIEX TripleTOF™ 5600 system.

 

Command Line Control and Open Results

To support users and third-party software vendors that want to integrate ProteinPilot&trade Software, it is possible to script searches via command line and decrypt the .group file results into clear XML for full access to all the data it contains.

 

 

For Research Use Only. Not for use in diagnostic procedures.